Original Contribution |
From the Second Department of Internal Medicine, Nihon University School of Medicine, Tokyo, Japan.
Correspondence to Masayoshi Soma, MD, PhD, Second Department of Internal Medicine, Nihon University School of Medicine, 30-1 Ooyaguchi-kamimachi, Itabashi-ku, Tokyo 173, Japan. E-mail msoma{at}med.nihon-u.ac.jp
| Abstract |
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16.5 kbp, is composed of 22 exons,
and the intron-exon junctions follow the GT-AG rule. Seven hundred
fifty base pairs of the 5'-flanking region were sequenced using a
thermal asymmetric interlacedPCR (TAIL-PCR) method. This region
contains 10 potential Sp1 binding sites and lacks a TATA box. Rapid
amplification of cDNA ends (RACE) revealed the transcriptional start
site at -14 bp. A CA/GT microsatellite repeat was identified with a
hybridization-based method and was converted to a sequence-tagged site
(STS). The GT microsatellite repeat was localized to intron 2
150 bp
downstream of the exon-intron junction. Two alleles, (GT)10 and
(GT)11, were detected in both EH patients and age-matched normotensive
(NT) controls. Multiple logistic linear regression analysis
indicated that the NPR-B genotype is associated significantly
with EH (odds ratio 1.55; 95% confidence interval, 1.02 to 2.35). The
(GT)11 frequency was 0.316 (65/206) for the EH group and 0.218 (44/202)
for the NT group and differed significantly between the EH and NT
groups (
2=4.97, P=0.026). The structural
organization of the human NPR-B gene was determined, and a novel GT
repeat polymorphism, which associated with EH, was identified.
These results suggest that one cause of EH is a mutation in this gene
or a closely related gene or region.
Key Words: natriuretic peptide receptor, type B gene structure association essential hypertension
| Introduction |
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Genetic dissection is a powerful tool for determining the cause of a complex trait such as essential hypertension (EH)10 11 and for understanding the pathophysiological role of the protein encoded by the gene. We recently reported the association of the endothelial constitutive nitric oxide synthase gene and EH.12 13 As for human NPR-B, the gene was mapped to chromosome 9p21-p12.14 The cDNA and deduced amino acid sequences of human NPR-B have been described.15 The genomic structure, however, has not been determined.
In the present study, we determined the genomic structure of human NPR-B and found a novel GT repeat polymorphism that is associated with EH.
| Materials and Methods |
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Isolation of the 5'-Flanking Region
To isolate the 5'-flanking region of the NPR-B gene, thermal
asymmetric interlaced (TAIL)PCR was used. The PCR conditions were
described previously,17 except that the annealing
temperature was 68°C. Five hundred nanograms of genomic DNA was used
as the template in the primary PCR reaction. Four arbitrary degenerate
(AD) primers were used: AD1, AD2, AD3, and AD4. Three specific primers,
which are complementary to the NPR-B gene, were synthesized (Table 2
), and the PCR products were
electrophoresed on 1.5% agarose gels. For sequencing, bands were cut
out of the gel and purified as described above.
|
Sequencing
PCR products were sequenced directly using a Thermo
Sequenase kit (Amersham) after purification over a column. More than 40
nucleotides of the coding region of the NPR-B gene were
sequenced together with the intron-exon boundaries.
Rapid Amplification of 5'-cDNA Ends (5'-RACE)
The 5'-RACE experiments were conducted to map the
transcriptional start site. 5'-RACE was performed using the 5'-full
RACE core set (Takara Syuzo Co Ltd, Tokyo, Japan) according to the
manufacturer's instructions. cDNA was synthesized using avian
myeloblastosis virus (AMV) reverse transcriptase XL and a
5'-phosphorylated 15-nucleotide antisense
primer (base pair +266 to +252 with respect to the ATG codon) and
having the sequence 5'-(P) AGC TTG AGG TCC ACA-3'. One microgram of
human pituitary gland poly-(A) selected +RNA (Clontech) was
reverse-transcribed using 5 U of AMV reverse transcriptase and 200 pmol
of the antisense primer. After purification of the single-stranded
cDNA, a ring structure was made (concatenating) using T4 RNA ligase. A
primary PCR was performed using a sense primer F1 5'-TGG ACC TGC GGT
TTG TCA GCT C (+185 to +206) and antisense primer R1 5'-TGC CAG GGC TGC
CAC CAA CA (+40 to +23). An aliquot of the initial PCR reaction served
as the template for a secondary PCR with sense primer F2 5'-AAC TGG AAG
GCG CCT GCT CTG A (+209 to +230) and antisense primer R2 5'-AGC AGA AGT
GAT GGC AGC GCC ATG G (+23 to -2), which yields a 98-bp product.
PCR products were analyzed on a 1.5% agarose gel and
sequenced directly.
Detection and Identification of a Microsatellite
Polymorphism
A CA/TG repeat microsatellite was identified in LA-PCR
products with a hybridization method described
previously.18 This microsatellite was converted to a
sequence-tagged site (STS) using the following primers: NPR-B-STS-F1
(GT strand) 5'-GGAGAGCTCTAAGTCTTAAGGCAC and NPR-B-STS-R1 (CA
strand) 5'-GGTCTCCCCCTCTTCTAATCCTG. The PCR products were separated
on a 6% polyacrylamide sequencing gel and visualized by
autoradiography (Figure 1
). To establish a control for the number
of dinucleotide repeats, amplified fragments were subcloned
into a pCR II plasmid vector (Invitrogen, Carlsbad, Calif) and
sequenced. Plasmid clones containing known numbers of GT repeats were
used as standard templates in the PCR (Figures 1
and 2
).
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Subjects
The study population included 103 patients with EH (EH
group; 48.5±9.1 years, mean±SD) who were given a diagnosis according
to the criteria of the World Health Organization. These criteria
include a sitting systolic blood pressure (SBP) of >160
mm Hg or diastolic blood pressure (DBP) of >95
mm Hg on 3 occasions spanning 2 months from the first medical
examination, without administration of antihypertensive drugs. Subjects
given a diagnosis of secondary hypertension were excluded. As a control
group, 101 normotensive healthy subjects (NT group; 48.2±7.1 years)
were also studied. The NT subjects had no family history of
hypertension, and, in all instances, their SBPs were <140 mm Hg
and their DBPs were <85 mm Hg. A positive family history was
defined as hypertension diagnosed in grandparents, parents, or
siblings. Both the patients and the control group were recruited from
the northern part of Tokyo, and informed consent was obtained from each
individual according to a protocol approved by the Human Studies
Committee at Nihon University.
Biochemical Analysis
The plasma concentration of total cholesterol
and the serum concentrations of creatinine and uric acid
were measured by standard methods in the clinical laboratory department
of the Nihon University hospital.
Statistical Analysis
Data are presented as mean±SD. Allele frequencies
were calculated from the genotypes of all subjects.
Hardy-Weinberg equilibrium was assessed by
2
analysis. Significant differences between the total number of
alleles on all chromosomes for the EH and NT groups were assessed
by
2 analysis with one degree of
freedom. The association between genotypes and hypertension was
evaluated by logistic linear regression analysis. EH was
regarded as the dependent variable and genotype, sex, age,
body mass index (BMI), and the concentrations of plasma total
cholesterol, serum, creatinine, and uric acid
were entered as independent variables. Differences in the clinical
data between the EH and NT groups and between genotypes were
assessed by ANOVA followed by the Fisher protected least significant
difference (PLSD) test. A value of P<0.05 was considered
significant.
| Results |
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16.5 kbp in length, which is
more than 30 times longer than the cDNA. The size range for the exons
is 69 bp (exon 18) to 667 bp (ATG-exon 1) and for the introns is
87 bp (intron 14) to 6.5 kbp (intron 3). All the intron-exon junction
sequences follow the GT-AG rule shown in Table 4
150 bp downstream of the exon-intron junction (Figure 3
|
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A TAIL-PCR method using the AD3 primer detected a single clear band.
This band was
1 kbp, and the sequence was determined after
purification with a column. Seven hundred fifty base pairs of the
5'-flanking region were sequenced (Figure 4
). This region did not include a TATA
box. The transcriptional start site was identified by sequencing the
concatenation product and is shown in Figure 4
.
|
Association of a Microsatellite Polymorphism With
Essential Hypertension
Clinical characteristics of the EH and NT subjects are shown in
Table 5
. SBP, DBP, BMI, pulse rate, and
plasma concentration of total cholesterol were
significantly higher in the EH group than in the NT group. Age and
serum concentrations of creatinine or uric acid were not
different between the 2 groups.
|
We found a novel GT/CA microsatellite repeat in intron 2,
150 bp
downstream of the exon-intron junction. Two alleles, (GT)10 and
(GT)11, were detected in both the EH group and the NT group. The
observed and expected heterozygosities were 0.16 and 0.15,
respectively, which were in good agreement with Hardy-Weinberg
equilibrium (
2=0.19, P=0.98). The
frequencies of the (GT)10/(GT)10, (GT)10/(GT)11, and (GT)11/(GT)11
genotypes were 0.624 (63/101), 0.317 (32/101), and 0.059
(6/101) for the NT group and 0.515 (53/103), 0.340 (35/103), and 0.146
(15/103) for the EH group, respectively. Logistic linear regression
analysis adjusted by age and sex revealed that NPR-B
genotype was associated significantly with EH (odds ratio 1.55;
95% confidence interval, 1.02 to 2.35).The frequencies of the (GT)10
and (GT)11 alleles were 0.782 (158/202) and 0.218 (44/202) for the
NT group and 0.684 (141/206) and 0.316 (65/206) for the EH group,
respectively, and differed significantly between the 2 groups
(
2=4.97, P=0.026). The
genotype or allele frequency was not associated with BMI,
pulse rate, or plasma levels of total cholesterol.
| Discussion |
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The significance of NP family genes in hypertension in animals has been reported, and the targeted deletion of the pro-ANP gene or NPR-A gene yielded mice with high blood pressure.22 23 However, the genetic studies of human ANP gene are conflicting. A study of 2 ANP restriction fragment length polymorphisms in healthy Norwegian twins revealed no association with SBP, DBP, or blood pressure variability.24 Rutledge et al25 reported that the allele frequency of an Hpa II mutation in intron 2 was significantly higher in the hypertensive individuals compared with normotensive African Americans, but this observation was not confirmed in Australians.26 The Hpa II polymorphism was not associated with salt-sensitive hypertension in Caucasians.27 In contrast to the ANP gene, there is no available data on NP receptors. In the present study, we found a novel GT repeat in intron 2 of the NPR-B gene and demonstrated a significant association with EH. No differences in sex, age, pulse rate, BMI, or the plasma concentration of total cholesterol were apparent between subjects who were homozygous for the (GT)10 allele and those who had at least one (GT)11 allele. These results suggest that the GT repeat polymorphism may be in linkage disequilibrium with the actual cause of EH, which may be the NPR-B gene or a locus near this gene.
In conclusion, we determined the genomic structure of the human NPR-B gene and found a novel GT repeat polymorphism that is associated with EH. This allele may be in linkage disequilibrium with the actual causal mutation, suggesting that one cause of EH is a mutation in the NPR-B gene or a closely located gene. The genomic structure of the human NPR-B gene may contribute to our understanding of the actual cause of EH.
| Acknowledgments |
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Received April 21, 1998; accepted January 3, 1999.
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