Original Contributions |
From the Cardiovascular Research Laboratory, Department of Physiology, UCLA School of Medicine, Los Angeles, Calif.
Correspondence to Hong Zhu, PhD, Department of Cardiovascular Biology, Rhone-Poulenc Rorer Research and Development, 500 Arcola Road, NW4, Collegeville, PA 19426. E-mail ZHUH{at}RP-RORER.COM
| Abstract |
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Key Words: myocyte proliferation cell cycle control transcriptional regulation development
| Introduction |
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A number of transcription factors, including E2F, NF-Y, Sp-1, c-myc, c-myb, and ets-2, have been shown to activate cdc2 transcription.7 11 12 13 NF-Y is a ubiquitous heterotrimeric transcription factor that activates transcription of a variety of genes by binding to a CCAAT boxcontaining cis element, which also serves as the core sequence for the binding sites of other transcription factors, such as NF-1 and C/EBP.14 Recently, there has been accumulating evidence showing that NF-Y is also involved in regulating the expression of genes required for cell cycle progression in certain cell types. For instance, the NF-Y binding site is required for the expression of the cdc2, cdc25C, and cyclin A genes in human myeloid leukemia cells and mouse fibroblasts.9 15 The interaction between the cyclin A promoter and NF-Y was confirmed by an antibody specific to one subunit of NF-Y, ie, NF-Yb.15 Furthermore, Chen et al16 have shown that the simian virus 40 large-T antigen activates the cdc2 promoter in CV-1 cells by inducing the DNA binding activity of NF-Y, suggesting that NF-Y also mediates inducible cdc2 expression. Not only does NF-Y activate the expression of these cell cycle control genes, but it also activates genes required for DNA replication during S phase, such as thymidine kinase, ribonucleotide reductase, and topoisomerase IIa.17 18 19 Interestingly, Isaacs et al19 have shown that the DNA binding activity of NF-Y in mouse fibroblasts is reduced as cells become confluence-arrested, suggesting that NF-Y activity is subjected to cell cycle regulation in these cells. However, the functions of NF-Y in regulating cdc2 expression in cardiac myocytes still remain to be investigated.
In the present study, we demonstrate that cdc2 mRNA expression in rat cardiac muscle is downregulated in early neonatal ventricles, turned off by the juvenile stage, and remains silent in the adult stage. A 0.1-kb cdc2 promoter region contains the major information required for transcriptional activation and suppression in fetal and neonatal cardiac myocytes, respectively. The transcription factor, NF-Y, plays a critical role in activating the 0.1-kb cdc2 promoter in fetal cardiac myocytes by binding to the CPBF site.
| Materials and Methods |
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Western Blot Analysis
Western blot analysis was performed as previously
described.22 Briefly, rat ventricular
tissues of various stages were homogenized in Laemmli
sample buffer (2% SDS, 100 mmol/L dithiothreitol, and 60
mmol/L Tris, pH 6.8). Fifty micrograms of protein from each sample was
resolved on an 8% SDS-polyacrylamide gel. NF-Ya and NF-Yb were
detected with antibodies against NF-Ya and NF-Yb, respectively (both
are generous gifts from Dr Roberto Mantovani at the University of
Milan, Italy).
Isolation and Culturing of Fetal and Neonatal Rat
Ventricular Myocytes and DNA Transfection
The isolation and culture of fetal and neonatal rat
ventricular myocytes are described
previously.20 In the present study,
Sprague-Dawley is the only rat strain used for all the studies.
Myocytes were dispersed from the ventricles of rat fetuses of 15-day
gestation or 1-day-old neonates by digestion with
collagenase II (Worthington) and pancreatin (GIBCO BRL) at
37°C. Myocytes were further purified by a discontinuous Percoll
(Pharmacia Biotechnology Inc) gradient to obtain myocardial cell
cultures with >95% myocytes, as assessed by
immunofluorescence with an antibody directed
against ventricular myosin light chain-2. Fetal and
neonatal ventricular myocytes were plated on 35-mm dishes
coated with laminin (Sigma). Ventricular myocytes were
cultured in DMEM+10% FBS+20% horse serum at a density of
1.0x105 cells per 35-mm dish chamber for 16
hours. The cardiac myocytes were transfected with various recombinant
plasmids according to calcium phosphate precipitation method described
by Chen and Okayama.23 The recombinant plasmids
that carry firefly luciferase cDNA and the progressively deleted human
cdc2 promoter regions (6.2, 1.8, 1.1, 0.7, and 0.1 kb) were kindly
provided by Dr Teresa L. Born at the University of California at San
Diego.24 A plasmid that expresses a
dominant-negative NF-Ya mutant (NF-YA29) was kindly provided by Dr
Roberto Mantovani at University of Milan (Italy). A recombinant plasmid
that carries the bacterial ß-galactosidase cDNA driven by the CMV
promoter was used as an internal control for transfection efficiency.
Luciferase and ß-galactosidase assays were performed as described
previously.25 For each experiment, three dishes
of myocytes were used, and each experiment was repeated four times with
different myocyte preparations.
Site-Directed Mutagenesis
To introduce each set of point mutations into the CPBF site in
the 0.1-kb cdc2 promoter, PCR was performed using four primers, two of
which were complementary to each other and contained the desired
mutations (Table
). The 0.1-kb cdc2 promoter fragment was
first isolated from the original luciferase containing plasmid and then
subcloned into pBluescript as an Sma ISac II
fragment. The upstream part of the 0.1-kb cdc2 promoter was amplified
by PCR using the pBluescript reverse primer and the antisense strand of
mutant CPBF oligonucleotide, and the downstream part
was amplified by PCR using the sense strand of the mutant CPBF
oligonucleotide and the pBluescript T7 primer. PCR
amplification was performed with 30 cycles consisting of 95°C for 30
seconds, 55°C for 1 minute, and 72°C for 30 seconds, followed by
one cycle at 72°C for 10 minutes. Two PCR products were then
mixed, and PCR amplification was repeated using the pBluescript reverse
primer and T7 primer with the same cycles. The PCR product was
purified, restricted with Sma I and Sac II, and
subcloned into the original luciferase plasmid. The specific point
mutations were confirmed by double-stranded plasmid sequencing of the
entire promoter region. The point mutations were also introduced into
the 6.2-kb cdc2 promoter by replacing the Sma
ISac II fragment with the mutant the Sma
ISac II fragment.
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Nuclear Extract Preparation
Nuclear extracts were prepared from cultured cells as previously
described26 with some minor modifications.
Briefly, cells were resuspended in ice-cold buffer A (10 mmol/L
HEPES [pH 7.9], 10 mmol/L KCl, 0.1 mmol/L EDTA, 1
mmol/L DTT, and 0.5 mmol/L PMSF) after harvesting. Cells were
lysed by a final 0.05% NP-40. The nuclei were pelleted by
centrifugation and extracted in buffer B (20
mmol/L HEPES [pH 7.9], 0.4 mol/L NaCl, 1 mmol/L EDTA, 1
mmol/L DTT, and 1 mmol/L PMSF). The nuclear suspension was
centrifuged, and the supernatant was stored at -80°C.
Nuclear extracts were prepared from ventricular muscle of fetal, neonatal, and juvenile rats according the previously described method with minor modifications.27 Ventricular muscles were minced and homogenized at a 1:2 ratio (vol/vol) with ice-cold homogenization buffer (10 mmol/L HEPES [pH 7.6], 15 mmol/L KCl, 2 mmol/L EDTA, 0.15 mmol/L spermine, 0.5 mmol/L spermidine, 0.5 mmol/L DTT, and 2 mol/L sucrose) supplemented with 0.5 mmol/L PMSF, 5 µg/mL aprotinin, 5 µg/mL pepstatin, and 5 g/mL leupeptin. Sucrose concentration was adjusted to final 1.9 mol/L by water. The homogenate was laid on top of a sucrose cushion (2 mol/L sucrose, 10% glycerol, 0.15 mmol/L spermine, 0.5 mmol/L spermidine, and the same panel of protease inhibitors as in the homogenization buffer). The nuclei were pelleted by centrifugation and resuspended in 10 to 50 vol buffer A (10 mmol/L HEPES [pH 7.9], 1.5 mmol/L MgCl2, 10 mmol/L KCl, 0.5 mmol/L DTT, and the same panel of protease inhibitors as in the homogenization buffer). The nuclei were pelleted in a microfuge and resuspended in 1 vol buffer B (20 mmol/L HEPES [pH 7.9], 25% glycerol, 0.55 mol/L NaCl, 1.5 mmol/L MgCl2, 0.2 mmol/L EDTA, 0.5 mmol/L DTT, and the same panel of protease inhibitors as in the homogenization buffer). The nuclear proteins were extracted in buffer B by three cycles of freeze-thaw. The extracts were centrifuged in a microfuge at top speed for 10 minutes, and the supernatant was dialyzed in 1 L of dialysis buffer (40 mmol/L KCl, 15 mmol/L HEPES [pH 7.9], 1 mmol/L EDTA, 0.5 mmol/L PMSF, 0.5 mmol/L DTT, and 20% glycerol) at 4°C overnight. The dialyzed nuclear extracts were stored in small aliquots at -80°C.
Gel Mobility Shift Assay
Gel mobility shift assay was performed as previously described
with some minor modifications.26 Ten micrograms
of nuclear extract was preincubated with 4 µL of 5x binding buffer
(200 mmol/L KCl, 75 mmol/L HEPES [pH 7.9], 5 mmol/L
EDTA, 2.5 mmol/L DTT, 25 mmol/L MgCl2,
and 25% glycerol) and 4 µg of poly(dI-dC) in a final volume of 18
µL for 30 minutes on ice. The DNA fragment was end-labeled by either
T4 DNA kinase or Klenow fragment with either
[
-32P]ATP or
[
-32P]dATP, 20 000 cpm of the labeled probe
(2 µL) was added to the assay mixture, and the mixture was incubated
for 30 minutes on ice. The reaction was resolved on a 5%
polyacrylamide gel in 0.5x TBE (45 mmol/L Tris-borate and
1 mmol/L EDTA) at 13 V/cm of gel at 4°C. For competition assay,
molar excess of unlabeled competitor DNA fragments at various fold
levels was added to the preincubation reaction. For antibody
"supershift" assay, 1 µL of antibodies against either NF-Ya or
NF-Yb was used in each DNA-protein binding reaction.
DNase I Footprint
A DNase I footprint assay was performed according to the
previously described method28 with minor
modifications. The 0.1-kb cdc2 promoter was
dephosphorylated with calf intestinal alkaline
phosphatase and then end-labeled with T4 DNA kinase with
[
-32P]ATP. DNA-protein binding reaction was
carried out in a 50-µL volume with 5 ng of an end-labeled 0.1-kb cdc2
promoter, 4 µg of poly(dI-dC), 25 µg of nuclear extracts in a final
buffer concentration of 25 mmol/L Tris-HCl [pH 7.9], 6.25
mmol/L MgCl2, 0.5 mmol/L EDTA, 50
mmol/L KCl, 0.5 mmol/L DTT, 10% glycerol, and 2% polyvinyl
alcohol. After dilution with an equal volume of a mixture containing
5 mmol/L CaCl2, 10 mmol/L
MgCl2, DNA was then digested for 1 minute at room
temperature with freshly diluted DNase I (Worthington). After removing
proteins by phenol-chloroform extraction, DNA was resolved on a 6%
polyacrylamide8 mol/L urea gel. A ladder of T-sequencing
reaction using the same template was used as the molecular weight
standard.
Methylation Interference Assay
Methylation interference assay was performed according the
previously described method with minor
modifications.26 The sense or antisense strand of
oligonucleotide was end-labeled by T4 DNA kinase with
[
-32P]ATP and annealed to the complementary
strand. The labeled probe was treated with dimethyl sulfate and used
for preparative gel mobility shift DNA-binding assay. The free and
protein-bound probes were excised from the gel and electroeluted. The
eluted DNAs were extracted with phenol-chloroform and precipitated with
ethanol. They were then cleaved in 100 µL of 1 mol/L piperidine at
90°C for 30 minutes, and the piperidine was removed by repeated
addition of water and lyophilization three times. The free and bound
probes were then resolved on a 12% polyacrylamide8 mol/L
urea gel.
Statistical Analysis
Values of experimental data were expressed as mean±SEM.
Statistical analysis was performed using the Mann-Whitney
U test. Mann-Whitney probability values (P) were
for the significance of differences in the luciferase activities
expressed from various cdc2 promoters in fetal myocytes, from the
0.1-kb cdc2 promoter between fetal and neonatal myocytes, or from the
wild-type and mutant 0.1-kb cdc2 promoters in fetal myocytes. Results
were considered significant at P<.05.
| Results |
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2.0
kb was detected in fetal ventricular muscle. In other cell
types, such as HeLa cells, however, cdc2 transcription is initiated
from two major sites, which result in a 2.0-kb and a 1.4-kb
mRNA.29 The cdc2 mRNA level, measured by
densitometer scanning, was decreased by
3-fold in neonatal
ventricular muscle, where myocytes are in the process of
withdrawing from the cell cycle. In juvenile and adult rat ventricles,
where myocytes have become permanently postmitotic, cdc2 mRNA becomes
undetectable. These results demonstrate that cdc2 mRNA expression in
ventricular muscle is downregulated as early as day 1 after
birth and that at the juvenile stage, cdc2 mRNA expression is turned
off. Consistently, cdc2 protein showed a temporal pattern
almost identical to that of cdc2 mRNA (Fig 1B
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A 0.1-kb cdc2 5' Flanking Region Confers Reporter Gene Expression
in Fetal Ventricular Myocytes
To determine whether the decrease in ventricular cdc2
mRNA level in day-1 neonatal myocytes is due to reduced transcription,
a transient expression assay was performed. The recombinant plasmids
that carry a firefly luciferase reporter gene driven by progressively
deleted 5' flanking regions of the human cdc2
gene24 were transfected into cultured fetal
ventricular myocytes. The schematic structures of these
overlapping cdc2 5' flanking regions are illustrated in Fig 2A
. The relative promoter activities were
determined by measuring luciferase activities in the lysates of
transfected cells. All five cdc2 chimeric plasmids had detectable
luciferase reporter gene expression in cultured fetal myocytes (Fig 2B
). A plasmid that carries the promoterless luciferase cDNA was used
as a negative control, and no luciferase activity was detected after
transfection (data not shown). In spite of the large differences in
lengths, differences in promoter activity were <2-fold among these
five fragments. The shortest 0.1-kb fragment contains 65±17%
(mean±SEM) promoter activity of the longest 6.2-kb fragment,
suggesting that the major information required for basal level cdc2
expression is located within the 0.1-kb fragment. Sequence
analysis revealed two inverted CCAAT boxes (IC box) that are
located at -46/-42 and -78/-74 within the 0.1-kb cdc2 promoter.
Although it has been shown that the IC boxes in the human cdc2 gene are
important for cdc2 transcriptional activation in human myeloid leukemia
cells, it is not clear whether the IC boxes are required for cdc2
transcriptional activation in fetal ventricular myocytes.
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Since the steady-state level of cdc2 mRNA is lower in neonatal muscle
compared with fetal muscle, we next determined whether the 0.1-kb cdc2
promoter also contains sufficient sequence to elicit developmental
transcriptional downregulation. To that end, we compared the relative
0.1-kb cdc2 promoter activities as well as the 6.2-, 1.8-, 1.1-, and
0.7-kb cdc2 promoter activities in neonatal and fetal myocytes by
transient expression assay. Fig 2C
shows that the activities of all
five cdc2 promoters in neonatal myocytes were 3- to 4-fold lower than
in fetal myocytes; these data are consistent with the data of
Northern blot analysis. Therefore, the 0.1-kb cdc2 promoter may
contain essential cis regulatory elements that are involved
in both transcriptional activation in fetal myocytes and downregulation
in neonatal myocytes.
A Single Protein Binding Site Containing the Upstream IC Box Is
Identified Within the 0.1-kb cdc2 Promoter
To detect nuclear proteins that interact with the 0.1-kb cdc2
promoter, a gel mobility shift assay was performed using nuclear
extracts prepared from fetal ventricular myocytes. The
0.1-kb cdc2 promoter fragment was end-labeled with
32P and used as a probe for DNA-protein
interaction. As shown in Fig 3
, a single
prominent DNA-protein complex was detected with fetal myocyte nuclear
extracts. To assess the specificity of this DNA-protein interaction,
binding competition was performed with 50-, 100-, and 200-fold molar
excess of either unlabeled 0.1-kb cdc2 promoter fragment or a
nonspecific DNA of the same size. The DNA-protein complex was
completely competed away by the unlabeled 0.1-kb cdc2 promoter fragment
at 50-, 100-, and 200-fold molar excess; however, the nonspecific DNA
fragment had little effect on the DNA-protein complex (Fig 3
). These
results indicate that the observed DNA-protein interaction is sequence
specific. A faint band was also observed below the prominent band,
which may represent a degradation product of the top band
or a second protein binding to the 0.1-kb fragment with a lower
affinity. This faint band also seems to represent specific
DNA-protein interaction because it was only competed away by the
unlabeled 0.1-kb cdc2 promoter fragment. The prominent DNA-binding
factor was named CPBF.
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To locate the CPBF binding site within the 0.1-kb cdc2 promoter, a
DNase I footprint assay was performed. The sense strand of the 0.1-kb
cdc2 promoter was end-labeled with 32P and used
as a template for DNA-protein interaction. An
oligonucleotide derived from the very 5' end of the
end-labeled strand was used as a primer for
dideoxynucleotide sequencing reaction, and the T-sequencing
reaction ladder was used as a molecular weight standard (Fig 4
, lane T). The same radiolabeled
template was digested by DNase I in the absence of nuclear extracts and
used as a control (Fig 4
, lane F). A single region from -92 to -67
was protected by the nuclear extracts from DNase I digestion (Fig 4
, lanes B). This protected region encompasses the upstream IC box
(-78/-74), whereas the downstream IC box (-46/-42) was not
protected (Fig 4
, right panel). Therefore, if the upstream IC box is
directly involved in this DNA-protein interaction, its flanking
sequences may also be important for the DNA-protein interaction. Since
the region from -92 to -67 seems to be the only protected region, we
hypothesized that it serves as the CPBF binding site. To test this
hypothesis, the following two binding competition assays were
performed. First, a gel mobility shift assay was performed using a
radiolabeled oligonucleotide derived from the putative
CPBF binding site (-92 to -67) as the probe (see the Table
for the
sequence). Prominent and lower faint DNA-protein bands were observed
with fetal myocyte nuclear extracts (Fig 5
, left panel). Both bands
represent specific DNA-protein interactions, since both were
only competed away with 100-fold molar excess of unlabeled CPBF
oligonucleotide. A random
oligonucleotide at the same molar excess did not have
any effects on these DNA-protein complexes. Second, a gel mobility
shift assay was performed with the end-labeled 0.1-kb cdc2 promoter
fragment as a probe and the unlabeled CPBF
oligonucleotide as a competitor. The DNA-protein
complex formed with fetal myocyte nuclear extracts was effectively
competed away with 10-fold molar excess and completely competed away
with 40- and 200-fold molar excess of the CPBF
oligonucleotide (Fig 5
, right panel). The above results
unambiguously prove that the nuclear extractprotected region from
-92 to -67 contains the CPBF binding site.
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To further characterize DNA-protein interaction at the CPBF site, we
used a methylation interference assay to define those G or A
nucleotides within the CPBF site that made close contact
with CPBF. The CPBF oligonucleotide that was
end-labeled at either the sense or antisense strand was subjected to
G-sequencing reaction, and the corresponding resultant sequencing
ladder was used as the molecular weight standard (Fig 6
, lanes G). As shown in the right panel
of Fig 6
, three nucleotides at the CPBF contact points were
identified on the sense strand: one relatively strong contact point at
-78 (A) and two weak contact points at -75 (G) and -74 (G).
Similarly, three nucleotides at CPBF contact points on the
antisense strand were identified: two relatively strong contact points
at -77 (A) and -76 (A) and one weak contact point at -80 (A) (Fig 6
, left panel). The CPBF contact points on both strands are located both
inside and outside the IC box (Fig 6
, bottom panel), further indicating
that the flanking sequences of the upstream IC box are important for
CPBF binding.
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To directly prove that these contact points are actually required for
CPBF binding, binding competition was performed using a radiolabeled
0.1-kb cdc2 promoter fragment as a probe and both wild-type and mutant
CPBF oligonucleotides as competitors. As illustrated in
the Table
, two mutant CPBF oligonucleotides were
synthesized; these contained point mutations either at the strong
contact point (CMM1) or weak contact point (CMM2). Since methylation
interference assay only detects the contact points at G or A
nucleotides, we also introduced two sets of point mutations
into the CPBF site at -70 and -68 (CMM3) or at -69 and -67 (CMM4),
where the corresponding T or C nucleotides could possibly
serve as the contact points. As shown in Fig 7
, CMM1 failed to compete away the CPBF
DNA-protein complex at 10-, 40-, and 200-fold molar excess. CMM2
partially competed away the CPBF DNA-protein complex at 10- and 40-fold
molar excess and completely competed away the complex at 200-fold molar
excess. The difference in competition efficiency between CMM1 and CMM2
is consistent with the notion that strong contact points play a
more important role in mediating DNA-protein interaction.
Interestingly, CMM3 failed to compete away the complex at 10-, 40-, and
200-fold molar excess, whereas CMM4 competed nearly as efficiently as
the wild-type CPBF oligonucleotide. Therefore, the C
nucleotide at -70 and T nucleotide at -68 on
the sense strand could function as the critical contact points for CPBF
binding, whereas the two T nucleotides at -69 and -67 on
the sense strand may not be so essential for CPBF binding. Since the C
nucleotide at -70 and T nucleotide at -68 on
the sense strand are both outside the IC box, the above results offer
further evidence that flanking sequences of the upstream IC box are
important for CPBF binding.
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Mutations That Abolish CPBF Binding Significantly Decrease the
0.1-kb cdc2 Promoter Activity
To determine whether CPBF actually activates the 0.1-kb
cdc2 promoter by binding to the CPBF site, mutations were introduced
into the CPBF site within the 0.1-kb cdc2 promoter by site-directed
mutagenesis. The locations of these mutations are identical to those in
the mutant CPBF oligonucleotides, ie, CMM1, CMM2, CMM3,
and CMM4, used for the binding competition assay as described above.
Therefore, we used the same nomenclature for the mutant 0.1-kb cdc2
promoters. The effects of these mutations on the 0.1-kb cdc2 promoter
activity were determined by transient expression assay in fetal
myocytes. Recombinant plasmids that carry the luciferase reporter gene
driven by CMM1, CMM2, CMM3, or CMM4 0.1-kb cdc2 promoter were
transfected into fetal myocytes, and the relative promoter activities
were compared with those of the wild-type 0.1-kb cdc2 promoter. The
activity of the wild-type 0.1-kb cdc2 promoter was arbitrarily set as
100%. As shown in Fig 8A
, mutations that
completely abolish CPBF binding decreased the promoter activity by
80±12% (mean±SEM) (CMM1) and 85±10% (mean±SEM) (CMM3),
respectively. The mutations that partially abolish or did not affect
CPBF binding decreased the promoter activity by 20±5% (CMM2)
(mean±SEM) and 5±3% (CMM4) (mean±SEM), respectively. Interestingly,
the activities of CMM1 and CMM3 in neonatal ventricular
myocytes were not significantly lower than in fetal
ventricular myocytes (Fig 8B
). To further confirm that CPBF
site plays a critical role in regulating cdc2 expression, CMM1 and CMM3
mutations were then introduced into the 6.2-kb cdc2 promoter.
Luciferase expression from the 6.2-kb CMM1 and CMM3 mutant promoters
was decreased by 73±14% (mean±SEM) and 70±27% (mean±SEM),
respectively. These results strongly indicate that CPBF binding to the
CPBF site is required for full promoter activity.
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Biochemical Evidence Suggests That CPBF and NF-Y Are Identical or
Closely Related
As described above, the CPBF site contains an IC box, which serves
as the core sequence of binding sites for transcription factors such as
NF-Y, C/EBP, and NF-1. Therefore, it is possible that CPBF is related
or identical to one of these factors. To assess the relationships of
CPBF to NF-Y, C/EBP, and NF-1, a binding competition assay was
performed using radiolabeled CPBF oligonucleotide as
probe and the oligonucleotides containing the consensus
binding sites of NF-Y, C/EBP, and NF-1 as competitors (see the Table
for sequences). The wild-type CPBF oligonucleotide and
mutant CPBF oligonucleotide, CMM1, were used as
positive and negative control competitors, respectively. As shown in
Fig 9
, the NF-Y consensus binding site
competed away the CPBF DNA-protein complex as efficiently as the
wild-type CPBF oligonucleotide at 40-fold molar excess.
The oligonucleotides of NF-1 and C/EBP consensus
binding sites had little effect on the CPBF DNA-protein complex at the
same molar excess. These results suggest a greater similarity between
CPBF and NF-Y than between CPBF and C/EBP or NF-1. Interestingly, an
oligonucleotide derived from the region of -59 to -31
in the 0.1-kb cdc2 promoter, which contains the downstream IC box
(-46/-42, DSC), also effectively competed away the CPBF DNA-protein
complex. Furthermore, we performed a gel mobility shift assay using the
radiolabeled consensus NF-Y binding site as the probe, which is the
same length as CPBF oligonucleotide (Fig 10
, bottom panel). For direct
comparison, results of competition assay using radiolabeled CPBF
oligonucleotide as a probe and unlabeled CPBF or NF-Y
oligonucleotide as a competitor were included. A single
DNA-protein complex was detected using NF-Y probe with fetal myocyte
nuclear extracts, which has the same mobility as the CPBF DNA-protein
complex (Fig 10
). In addition, the NF-Y DNA-protein complex was
completely competed away by unlabeled CPBF or NF-Y
oligonucleotide at 40-fold molar excess. On the basis
of these results, we hypothesized that CPBF was identical or closely
related to NF-Y.
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To further investigate the relationships between CPBF and NF-Y, an
antibody supershift assay was performed. NF-Y is a heterotrimeric
transcription factor that is composed of NF-Ya, NF-Yb, and NF-Yc
subunits.30 We reasoned that if CPBF is identical
to NF-Y, antibodies against one of the three NF-Y subunits would either
block the formation of the CPBF DNA-protein complex or decrease its
mobility by physically associating with the corresponding NF-Y subunit.
Therefore, we tested the effects of antibodies against either NF-Ya or
NF-Yb on the CPBF DNA-protein complex by gel mobility shift
assay.31 As shown in Fig 11A
, when antibodies against NF-Ya were
incubated with CPBF oligonucleotide and fetal myocyte
nuclear extracts, the CPBF DNA-protein complex was "supershifted"
to a higher position in the polyacrylamide gel, indicating a
decrease in mobility of the DNA-protein complex (FVNE, lane +). The
preimmune serum did not have any effects (FVNE, lane -). When the same
experiment was performed with NF-Yb antibodies (Fig 11B
), the CPBF
DNA-protein complex was also supershifted (FVNE, lane +). In fact, the
CPBF DNA-protein complex associated with NF-Yb antibodies hardly
entered the gel (Fig 11B
). The preimmune serum did not have any effects
(FVNE, lane -). The above results indicate that CPBF contains NF-Ya
and NF-Yb subunits. Altogether, our results further prove that CPBF in
fetal myocytes is identical or closely related to NF-Y.
|
To functionally demonstrate that NF-Y or its related transcription
factor activates the 0.1-kb cdc2 promoter in fetal myocytes,
cotransfection was performed using the 0.1-kb cdc2 promoter/luciferase
plasmid and a dominant-negative NF-Ya mutant (NF-YA29) overexpression
plasmid. It has been shown that overexpression of NF-YA29 in other cell
types can specifically suppress NF-Yactivated
transcription.32 Luciferase expression from the
0.1-kb cdc2 promoter in fetal ventricular myocytes was
suppressed by expression of NF-Ya in a dose-dependent manner (Fig 11C
),
whereas the control plasmid lacking NF-YA29 cDNA did not have any
effects (data not shown). This result further indicates that NF-Y or
its related transcription factor activates the 0.1-kb cdc2
promoter in fetal myocytes.
Possible NF-Y Involvement in Downregulation of cdc2 Transcription
During Postnatal Development
Since NF-Y or its related transcription factor plays a critical
role in activating the 0.1-kb cdc2 promoter in fetal
ventricular myocytes, it is possible that the decrease in
0.1-kb cdc2 promoter activity in neonatal myocytes is induced by a
decrease in NF-Y activity. To test this possibility, we compared NF-Y
DNA binding activities in fetal, neonatal, and juvenile
ventricular muscle by gel mobility shift assay using CPBF
oligonucleotide as a probe. To our surprise, NF-Y in
the nuclear extracts prepared from fetal(FVNE) and neonatal (NVNE)
ventricular muscle was highly comparable, as judged by
intensity, mobility, and immune reactivity to NF-Y antibodies (Fig 11A
and 11B
). This result suggests that NF-Y may not be involved in the
initial downregulation of cdc2 transcription at the early neonatal
stage. The quantity of NF-Y from the nuclear extracts of juvenile
ventricular muscle (JVNE) was also comparable to that from
fetal ventricular muscle, except its mobility is faster
than its counterpart from fetal and neonatal ventricular
muscle. This difference in mobility was reproducible with five
different preparations of ventricular nuclear extracts.
Higher mobility of juvenile ventricular NF-Y suggests that
it may lack a subunit, which could result in the inactivation of NF-Y.
Since the NF-Y DNA-protein complex from juvenile
ventricular muscle can also be supershifted by antibodies
against either NF-Ya or NF-Yb (Fig 11A
and 11B
), it is possible that
NF-Yc becomes absent in juvenile ventricular muscle.
Western blot analysis with antibodies against NF-Ya or NF-Yb
showed that indeed the protein levels of both NF-Ya and NF-Yb are
identical in fetal, neonatal, juvenile, and adult rat
ventricular muscle (Fig 11D
). However, this hypothesis
cannot be directly tested because of the lack of antibodies against
NF-Yc. Interestingly, the juvenile ventricular NF-Y complex
comigrates with the faint lower NF-Y DNA-protein complex observed with
FVNE and NVNE (Fig 11A
and 11B
). This faint lower band displayed
identical sequence specificity and immune reactivity to antibodies
against either NF-Ya or NF-Yb (Figs 3
, 5
, 11A
, and 11B
). Thus, the
lower faint band could possibly represent the fraction of NF-Y
in fetal and neonatal ventricular muscle that only contains
NF-Ya and NF-Yb.
| Discussion |
|---|
|
|
|---|
95% of rat terminally
differentiated cardiac myocytes are arrested in
G0 and G1
phases,34 a G1 blockade
that blocks the entry into S phase may be established in these
myocytes. Therefore, the factors that downregulate cdc2 mRNA expression
in neonatal cardiac myocytes could participate in the establishment of
G1 blockade. It has been shown recently that this
G1 blockade can be overcome or bypassed by two
adenovirus nuclear oncoproteins, E1A and E1B.35
E1A protein can disrupt the functions of a family of growth suppressor
proteins collectively known as the pocket proteins, which block the
G1 to S transition.36 37
One well-established mechanism by which these pocket proteins suppress
G1 to S transition is to bind and sequester the
transcription factor E2F. Therefore, pocket proteins could possibly
become constitutively active in cardiac myocytes during terminal
differentiation and block the entry into S phase. As a result, cardiac
myocytes become permanently growth-arrested at the
G1 phase and some subsequently enter the
G0 phase. As a further proof, Kirshenbaum et
al38 have reported that the overexpression of the
human E2F-1 gene can completely mimic the effect of E1A/E1B
overexpression in reactivating DNA synthesis in neonatal rat
ventricular myocytes. However, it is not clear whether
overexpression of E1A/E1B or E2F-1 can reactivate cdc2
expression in terminally differentiated cardiac
myocytes.34 37 As described above, cdc2
transcription is suppressed by E2F-independent mechanisms on entry into
the G1 phase or by growth arrest in a number of
cell types.9 15 39 Consistently, our data
in the present study indicate that the activity of the 0.1-kb cdc2
promoter that lacks the E2F site is downregulated in cardiac myocytes
at an early neonatal stage in parallel to the downregulation of
endogenous cdc2 mRNA. Therefore, it is possible that
factors in addition to E2F may be involved in suppression of cardiac
cdc2 transcription during terminal differentiation and could be
critical components of the G1 blockade.
Does NF-Y Serve as a General Transcription Factor for Cell Cycle
Control Genes in Cardiac Myocytes?
In cycling cells, genes involved in progression through the same
phases of the cell cycle are generally regulated in a coordinated
fashion through common transcription factors, such as
E2F.15 Recent studies in various cell types have
indicated that NF-Y may also serve as such a common transcription
factor for a number of cell cycle control genes. For instance, the
activities of cdc25C, cyclin A, and cyclin B are required for CDK1 to
control G2 to M transition; thus, the expression
patterns of these three genes in cycling cells are very
similar.7 8 15 They are activated at
either early S phase (cdc2 and cyclin A) or late S phase (cyclin B and
cdc25C) and become suppressed in early G1 phase.
The cdc2, cyclin A, and cdc25C genes all contain NF-Y sites in their
promoters, which are required for their transcriptional activation at S
phase.15 At G1 phase, NF-Y
sites seem to be suppressed by two downstream negative regulatory
elements, CDE and CHR,15 collectively known as
the R box in the cdc2 promoter.9 Zwicker et
al15 have shown that mutations at either the CDE
or CHR site lead to almost complete loss of cell cycle regulation of
these three genes. The molecular mechanisms by which the CDE and CHR
sites suppress NF-Y sites at the G1 phase still
remain to be elucidated. Thus, in proliferating cells, NF-Y
activates the expression of the cdc2, cyclin A, and cdc25C
genes in the S phase, and this activation is suppressed in the
G1 phase by downstream negative regulatory
elements in the promoters. Yoshizumi et al40 have
shown that the expression of cyclin A during myocardial development is
quite similar to that of the cdc2 gene: it is downregulated after birth
and turned off at the juvenile stage. It seems likely that the cdc2 and
cyclin A genes, and possibly other cell cycle control genes, are
regulated by common transcription factors, such as NF-Y, in fetal
cardiac myocytes. Permanent downregulation of the genes encoding NF-Y
subunits, eg, NF-Yc, could play a particularly important role in
reducing the expression of these cell cycle control genes during
postnatal myocardial development. Thus, a study of the regulation of
NF-Y expression, in particular, the NF-Yc subunit, in cardiac muscle
during terminal differentiation would be an important contribution
toward fully understanding cell cycle control in cardiac myocytes.
| Selected Abbreviations and Acronyms |
|---|
|
| Acknowledgments |
|---|
| Footnotes |
|---|
Received March 17, 1997; accepted October 30, 1997.
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