Molecular Medicine |
From the Heart Failure Research Center (T.H., A.C.H., P.E.M.H.H, F.J.d.L., D.E.W.C., A.F.M.M., V.M.C.), Academic Medical Center, University of Amsterdam; and the Hubrecht Institute and Interuniversity Cardiology Institute Netherlands (H.e.A.), Royal Netherlands Academy of Sciences, Utrecht, the Netherlands.
Correspondence to Vincent M. Christoffels, Heart Failure Research Center, AMC, University of Amsterdam, Meibergdreef 15, 1105 AZ Amsterdam, the Netherlands. E-mail v.m.christoffels{at}amc.uva.nl
| Abstract |
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Key Words: Nppa atrial natriuretic peptide heart development hypertrophy cardiac disease heart failure
| Introduction |
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Proximal promoter fragments (0.5 to 3.4 kbp) of Nppa of human, rat, mouse, and Xenopus have been shown to drive atrial and fetal ventricular expression both in vivo6–11 and in cell cultures12,13 and to provide a hypertrophy stress response in cardiomyocyte cell cultures and after injection as plasmid DNA in the ventricles of failing dog hearts.11,14,15 As such, the proximal Nppa promoter has become the most widely used model promoter that has importantly contributed to revealing transcriptional networks involved in cardiac gene regulation during cardiac development, health, and disease (reviewed elsewhere16–18). Nonetheless, the Nppa promoter fragments have been shown to lack hypertrophy responsiveness in vivo.8 From these findings it has been concluded that the fetal gene program is regulated by sequences within the 0.7-kbp proximal promoter fragment, whereas the reactivation of the "fetal" gene program during disease is regulated by sequences residing outside this fragment and therefore by a divergent pathway. However, a recent study indicated that the ventricular activity is absent from an even larger promoter fragment,19 hindering any conclusions regarding the divergence of fetal and hypertrophy pathways. In addition, this lacking function would make the proximal promoter a physiologically less relevant readout for the activity of cardiac transcriptional pathways. To address these issues, we assessed the regulatory activity of the Nppa locus in transgenic mice in detail. We found that the proximal Nppa promoter fragments, currently frequently used in studies of cardiac development and disease, lack critical regulatory functions for ventricular activity during development and in disease. Furthermore, the fetal activity of Nppa is regulated independently from its stress response and reactivation during cardiac disease, both processes requiring distal regulatory sequences. Therefore, ventricular activity before birth and reactivation during disease are regulated by divergent transcriptional pathways.
| Materials and Methods |
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MHC-Gal4 heart failure mouse model have been described previously.9,19,20 The –0.7rLacZ construct was targeted as a single copy to the hypoxanthine phosphoribosyltransferase (Hprt) locus as described (Hprt–0.7rLacZ) (Figure 1A and 1B).21 To generate the –0.7mLacZ construct, we replaced the rat Nppa promoter sequence by that of the mouse Nppa promoter sequence in the –0.7rLacZ construct (Figure 1D). Subsequently, to make the –0.7/+4mLacZ construct (Figure 1D), we replaced upstream sequences in the –3/+4mCre fragment with this –0.7mLacZ construct. The –3mCre construct was generated by truncating the –3/+4mCre construct in the third exon, proximal from the neuron-restrictive silencer element (NRSE) (Figure 1D). A –380/–138 rat Nppa promoter fragment was PCR-amplified and fused to the –230/+126 cTnI-LacZ construct flanked by insulator sequences previously described9 to generate the 0.25rNppacTnILacZ construct (Figure 1D).
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Two BAC clones of a mouse 129 SvJ BAC library (Incyte, St Louis, Mo) harboring Nppa were end-sequenced to establish the genomic sequences they contain. The BAC clone 337 ranged from –27 to +127 kbp and clone 336 from –141 to +58 kbp relative to the transcription start site of Nppa (Figure 1C and 1D). At the translation start site of Nppa of both BACs, we replaced sequence cc.cac.gcc.agc.ATG.ggc by Egfp using the BAC modification protocol kindly provided by Gong, Heintz, and colleagues.22 Subsequently, the –11/+5mEgfp construct was generated from the modified BAC336-Egfp construct (Figure 1D).
An expanded Materials and Methods section is in the online data supplement, available at http://circres.ahajournals.org.
| Results |
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The pattern of the Hprt–0.7rLacZ construct was compared with that of 2 lines in which the –0.7r-kbp promoter lacZ construct was randomly integrated in the genome. Both lines showed similar cardiac expression during development, including ectopic expression in the sinus horns and mediastinal myocardium, albeit that the ventricular activity was relatively weak. In addition, the –0.7rLacZ promoter fragment was ectopically active outside the heart (Figure 2). At birth, line A (–0.7rLacZA) expressed lacZ homogeneously in the atria, whereas some activity was present in the left ventricle (Figure 4B). In the adult heart, the atrial expression had become patchy and the ventricular activity had disappeared (Figure 4E). In line B, expression in the atria was patchy at the day of birth, whereas expression in the ventricles was no longer detectable (Figure 4C). In the adult hearts of this line, only a few atrial cells still expressed the construct (Figure 4F). These observations indicate that the previously observed postnatal ventricular downregulation of the proximal Nppa promoter fragments8 may not be specific to the ventricle and may be dependent on the site of integration.
Key Regulatory Functions of Nppa Reside Within a Small "Atrial" Module, Whereas Extension of Proximal Promoter Fragments Diminishes Ventricular Activity
Previous studies indicated that the 0.7-kbp Nppa promoter fragment is organized in 3 modules, a ventricular and developmental module, an atrial module, and a basic cardiac promoter.12,25 We tested the contribution of the ventricular module in vivo by placing a 0.25-kbp fragment containing only the atrial module upstream of a cTnI promoter fragment (0.25rNppacTnI) (Figure 1D) that is normally always expressed in the atrioventricular canal and only shows limited expression in the atria.9 This resulted in an expression profile comparable with that of the 0.5rNppacTnI fragment containing both the atrial and the ventricular module (Figure 7 and Figure I in the online data supplement),9 with repression of the cTnI promoter fragment in the atrioventricular canal and activity driven in the atria and in the left ventricle. These findings indicate that the regulatory sequences responsible for the atrial and ventricular activity of the 0.7-kbp proximal Nppa promoter reside within the atrial module and that the ventricular module does not contribute significantly.
We previously showed that a 7-kbp mouse Nppa fragment (–3/+4mCre), which includes the 0.7-kbp fragment, is virtually inactive in the ventricles (Figure 7 and supplemental Figure IIA).19 By truncation experiments, we tested whether a ventricular repressor either upstream (located between –3 and –0.7 kbp) or downstream (located between –0.7 and +4 kbp) could explain the lack of ventricular activity. Both the up- and downstream truncated construct (Figure 1D) showed almost exclusive atrial expression, similar to –3/+4mCre transgenes (Figure 7 and supplemental Figure IIA through IIC). These findings argue against a repressor located within the 7-kbp fragment that inhibits ventricular expression.
The 7-kbp Nppa fragment is from mouse, whereas the 0.7-kbp promoter fragment that showed activity in the ventricles is from rat. The rat proximal promoter contains marked sequence differences with those of mouse and human.12 To examine whether these differences could account for the lack of ventricular activity in the larger constructs, we tested the 0.7 kbp of the mouse Nppa promoter (–0.7mLacZ) (Figure 1D). Similar to the rat 0.7-kbp promoter, this construct was active in both the atria and the ventricles, was correctly inactive in the atrioventricular canal and outflow tract, and was ectopically active in the sinus horns (Figure 7 and supplemental Figure IID). Thus, the lack of ventricular expression of the larger constructs cannot be explained by a species difference.
In search for lacking sequences responsible for ventricular activity, we subsequently generated a larger construct of 16 kbp (–11/+5mEgfp) (Figure 1D). However, this construct appeared completely inactive in the ventricles as well (Figure 7 and supplemental Figure IIE). Taken together, our data indicate that enhancers outside a –11- to +5-kbp fragment are required for ventricular activity.
Distal Regulatory DNA Regions for the Ventricular Pattern and Fetal Activity
To identify distal regulatory sequences, we used 2 Nppa containing BAC clones of 150 to 200 kbp, respectively, with 85 kbp of overlapping sequences (Figure 1C and 1D). An enhanced green fluorescent protein (EGFP) encoding reporter gene (Egfp) was inserted at the translation start site of Nppa in both BACs. Transgenic mouse lines were generated carrying the modified BAC clones. EGFP expression in 5 independent mouse lines carrying BAC337-Egfp showed similar spatiotemporal patterns but different expression levels (Figure 5C, 5D, 5G, and 5J). All lines showed ectopic expression in the neural tube (Figure 5C). In situ hybridization on sections showed robust expression of Egfp in the atria but also ectopic expression in the sinus horns and in the mediastinal myocardium (Figure 5G), in a pattern similar to that of the –0.7rLacZ constructs. In the ventricles, the spatial pattern of Egfp expression resembled the endogenous Nppa pattern, restricted to the trabeculae after E9.5 (Figure 5G and 5J). However, the observed ventricular fluorescence and the signal in in situ hybridization were very low when compared with the atria (Figure 5D and 5G). Three weeks after birth, ventricular fluorescence was no longer detectable (Figure 6D through 6F).
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Two independent mouse lines carrying BAC336-Egfp showed a similar pattern and intensity of expression. Expression was restricted to the heart, with abundant expression in the atria and ventricles (Figure 5A, 5B, 5F, and 5I). The pre- and postnatal patterns of expression of Nppa and BAC336-Egfp were identical, including absence of expression from the mediastinal myocardium and sinus horns (Figure 5E, 5F, 5H, and 5I) and downregulation of ventricular activity after birth (Figure 6A through 6C), indicating that this BAC clone contains all regulatory sequences involved in fetal spatiotemporal Nppa gene regulation.
To assess whether the BAC sequences provide correct fetal ventricular activity and perinatal downregulation, the atrial and ventricular expression levels of Nppa and Egfp were quantified before and after birth (Figure 5K). At E17.5, ventricular expression of both Nppa and BAC336-Egfp were
5% of atrial expression. After birth, both were downregulated in the ventricles to 1% of atrial expression. In contrast, in E17.5 embryos carrying BAC337-Egfp, ventricular Egfp expression was <1% of atrial Egfp expression and remained at this low level after birth. Subsequently, we calculated the ratios of Egfp and Nppa mRNA levels in E17.5 atria and ventricles of 2 BAC336- and 3 BAC337-Egfp transgenic lines (Figure 5L). In both BAC336-Egfp lines, the ratio of the levels of Egfp and Nppa mRNA in the atria was similar to the ratio in the ventricles, whereas in all BAC337-Egfp lines, the ratio of Egfp and Nppa mRNA in the ventricles was
10% of the ratio found in the atria. These findings indicate that BAC337-Egfp lacks a ventricular enhancer that is mainly active before birth; this enhancer is located, instead, within the unique sequences of BAC336-Egfp (Figure 7).
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Distal Regulatory Sequences Control the Stress Response of Nppa
In the Hprt locus, ventricular activity is maintained even in the adult heart. To test whether the 0.7-kbp proximal Nppa promoter in this transcriptionally favorable context is inducible in the failing ventricle in vivo, we subjected these mice to cardiomyopathy using a transgenic model in which Gal4 is driven by the
MHC promoter (
MHC-Gal4).20 All male Gal4-positive offspring develop aspecific dilated cardiomyopathy 3 weeks after birth, which is associated with strong induction of Nppa. Although endogenous Nppa was strongly induced in double transgenic mice, the Hprt–0.7rLacZ construct was not (Figure 6G). Subsequently we tested the 7-kbp fragment, which lacks the capacity for embryonic ventricular expression but contains an NRSE implicated in induction of Nppa promoter fragments in heart failure.26 This –3/+4mCre construct was not reactivated in the ventricles either (Figure 6G).
In contrast, mice carrying either BAC336-Egfp or BAC337-Egfp showed strong reactivation of Egfp in the failing ventricles (Figure 6A, 6D, and 6G). In ventricles of BAC336-Egfp mice, Egfp was upregulated 12-fold relative to its level in healthy littermates, which is similar to the upregulation of endogenous Nppa. In mice carrying BAC337-Egfp, an exceptional 50-fold induction of Egfp over basic ventricular expression level was observed, the height of the induction being, at least in part, attributable to the low basic expression level of BAC337-Egfp in the healthy ventricle. Also, transverse aortic constriction of mice carrying these BACs induced the expression of both Nppa and Egfp (Figure 6B, 6C, 6E, and 6F and supplemental Figure III), demonstrating that the regulatory sequences in both BACs mediate the response of Nppa to pressure overload hypertrophy. These results show that both BAC clones contain the regulatory sequences required for the cardiac stress response of Nppa (Figure 7).
| Discussion |
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1% of total mRNA), whereas its expression in the ventricles is downregulated.27 Reactivation of Nppa expression is part of a highly conserved adaptive change in gene expression in response to hypertrophy and heart failure, serving both diagnostic and potentially therapeutic options. Because of these properties, Nppa has become a widely used model gene for studying gene regulation and monitoring phenotypic changes during cardiac disease (reviewed elsewhere18,28,29). Proximal promoter fragments are frequently used as readout tools for the activity of a wide range of transcriptional pathways that control patterning of the developing heart and gene regulation in healthy, hypertrophic, or failing ventricular myocardium (reviewed elsewhere16–18). It is therefore important to know which regulatory functions the proximal promoter contains. Promoter fragments ranging from –3.4 to –0.5 kbp were reported to efficiently drive expression in the atria and, in several cases, also in the ventricles of transgenic mice and Xenopus.6–10 Furthermore, analysis of promoter activity in transfected atrial and ventricular myocytes and noncardiac cells has indicated that the Nppa promoter is organized in 3 modules: a basic cardiac promoter, a developmental- and atrial-specific module, and a ventricular enhancer located just upstream of the atrial module.12,30,31 These studies have led to the present view that the proximal Nppa promoter correctly drives atrial and fetal ventricular expression and postnatal ventricular downregulation. Our present data reveal that the proximal promoter fragments lack important regulatory functions required for fetal ventricular activity. All promoter fragments analyzed were active in the atria and correctly inactive in the atrioventricular canal and outflow tract of the developing heart and in the nodes of the mature heart (Figure 7). The "atrial" module in the context of the cTnI promoter was found to be largely sufficient to provide these characteristics (Figure 7 and supplemental Figure I). These results provide in vivo support for previous studies showing that the activity of the promoter is mediated by T-box factors and Nkx2–5 that act on sites within this atrial module.9,32,33 In contrast, the ventricular regulatory characteristics appeared to largely lack from proximal promoter fragments. Firstly, the fetal transmural pattern of expression of the Nppa gene was not recapitulated in transgenic mice. Secondly, whereas ventricular activity was observed in the favorable genomic context of the Hprt locus, in randomly integrated constructs, it was weak and absent in the context of larger Nppa fragments (up to –11/+5 kbp). Thirdly, the activity of the 0.7-kbp promoter was not correctly downregulated in the ventricles after birth. In the context of the Hprt locus, the Nppa promoter fragment remained active, and in the randomly integrated constructs, the inactivation was nonspecific, as also the atria lost expression. Finally, analysis of the BAC transgenic mice revealed that fetal ventricular expression requires 2 distinct distal sequences. The ventricular transmural pattern requires additional regulatory sequences located between –27 to –11 kbp and/or +5 to +58 kbp relative to the Nppa gene, whereas fetal ventricular activity is provided by a distinct strong fetal ventricular enhancer that we located more upstream between –141 to –27 kbp (Figure 7). Therefore, the atrial module within the proximal promoter may provide only residual ventricular activity, which is unmasked in a favorable genomic context. Taken together, we conclude that the activity pattern of the Nppa proximal promoter region is very useful to study atrial gene activity and repression in the nodes of the conduction system but does not represent a physiologically relevant readout for ventricular gene regulation in the developing and adult heart.
Distinct Regulatory Sequences and Divergent Pathways Drive Fetal Activity and Stress Response
The proximal promoter of Nppa is responsive to hypertrophic stimuli in some experimental settings11,14,15 but does not respond to ventricular hypertrophy in transgenic mice in vivo.8 Our analysis confirms and extends these observations in a different heart disease model. Firstly, we tested a larger fragment that contains an NRSE that has been implicated in the hypertrophy response of Nppa. Although this NRSE is sufficient to mediate a response to hypertrophic stimuli in vitro through neuron-restrictive silencer factor,26 our results indicate this is not the case in vivo. Secondly, in previous studies, the postnatal expression and the inducibility of Nppa promoter fragments has been tested in mice carrying randomly integrated promoter constructs, which, according to our findings, may become downregulated by postnatal silencing that is not specific to the ventricles. We circumvented this potential problem by testing the inducibility of the 0.7-kbp promoter in the context of the Hprt locus that stays transcriptionally accessible throughout life. Again, the transgene was found to be nonresponsive in the cardiac disease model. Taken together, all data consistently indicate that the proximal promoter region lacks critical sequences that mediate the induction of Nppa, rendering the fragment completely nonresponsive to cardiac disease in vivo.
Based on the assumption that the proximal promoter fragments drive fetal ventricular activity, previous studies indicated that reactivation of the fetal gene program during cardiac disease is regulated by pathways distinct from those that regulate prenatal ventricular activity.8 As discussed above, our analysis shows that also the fetal ventricular activity functions are lacking from the proximal promoter fragments. Therefore, the previous conclusion regarding the divergent pathways was premature.
The analysis of 2 BAC transgenic mice revealed that ventricular Nppa regulation requires a multipartite ventricular regulatory module. This module consists of the proximal 0.25-kbp atrial module driving residual ventricular expression and at least 2 additional distal sequences (Figure 7). Whereas BAC337-Egfp provided the correct fetal transmural ventricular pattern, and was appropriately reactivated during disease, its ventricular activity before birth was similarly low as in the adult heart, indicating that BAC337 lacks a ventricular enhancer that induces activity before birth. In contrast, BAC336-Egfp activity mimicked all aspects of ventricular Nppa regulation, including fetal transmural pattern, abundant fetal activity, perinatal downregulation, and reactivation in hypertrophy and in heart failure. These results indicate that shared sequences, residing within both BAC clones, may regulate the typical fetal transmural (trabecular) ventricular pattern and reactivation in cardiac disease (Figure 7). Importantly, this analysis also revealed that the sequences required for activity in the fetal ventricle are located in a different genomic region, more than –27 kbp upstream (Figure 7). Therefore, the reactivation in the failing ventricle and the fetal ventricular activity are regulated by distinct distally located sequences and, consequently, divergent pathways converging on these sequences. Further mapping will be required to locate the discrete cis elements and factors that mediate these respective activities.
| Acknowledgments |
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Sources of Funding
This work was supported by Netherlands Heart Foundation grant 96.002 (to V.M.C. and A.F.M.M.), Netherlands Organization for Scientific Research Vidi grant 864.05.006 (to V.M.C.), and European Union FP6 contract "Heart Repair" LSHM-CT-2005-018630 (to V.M.C. and A.F.M.M.)
Disclosures
None.
| Footnotes |
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